Microsoft Intune Security Baseline Update Issue Causes Loss of Custom Settings – What Admins Need to Know

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Microsoft has identified a security baseline policy update issue in Intune where custom settings differing from recommended defaults are lost during upgrades (e.g., 23H2 to 24H2). Admins should manually reapply customizations until a fix is released. Stay updated via Microsoft Learn. Bullet points:

Microsoft Intune Security Baseline Update Issue: What You Need to Know

Microsoft recently uncovered a glitch in the Intune security baseline update process. This affects admins updating from one baseline version to another, like from 23H2 to 24H

What’s New: The Customization Problem

The core issue is that any custom settings differing from Microsoft’s recommended baseline values aren’t saved during updates. This means your tailored security tweaks might disappear unexpectedly.

For organizations relying on precise security configurations, this can cause headaches and potential gaps in protection.

“Customizations made, which differ from the security baseline recommended value, aren’t retained during the update process.” – Intune Support Team

Major Update: Temporary Workaround for Admins

While Microsoft works on a permanent fix, the suggested workaround is manual reapplication of customizations after each baseline update. It’s not ideal but necessary to maintain your security posture.

Admins should refer to the official Microsoft Learn documentation on updating profiles to the latest baseline version for detailed guidance.

Why This Matters

Security baselines are crucial for enforcing consistent and robust endpoint protection. Losing custom settings during updates risks weakening defenses or causing compliance issues.

Therefore, staying vigilant during baseline upgrades and double-checking configurations is essential for IT teams.

“We’re working on a fix to address this issue and will update this blog when we have more information.” – Intune Support Team

What’s Next: Monitoring and Support

Microsoft promises a fix soon but hasn’t provided a timeline yet. Meanwhile, admins can ask questions or report issues via the Intune support team on X (formerly Twitter) at @IntuneSuppTeam.

Following the Microsoft Community Hub blog is also advised to catch updates as they happen.

Final Thoughts

If you manage endpoint security with Intune, this update issue is a reminder to stay proactive. Always verify your custom settings after baseline upgrades to avoid surprises.

Although it’s a temporary annoyance, the Intune team’s transparency and support channels make navigating this smoother. Keep an eye out for the upcoming fix to streamline your security baseline updates.

  • The issue affects customers updating to newer security baseline versions in Intune.
  • Customizations not matching baseline recommendations are not retained after updates.
  • A temporary workaround is to manually reapply custom settings post-update.
  • Microsoft is actively working on a permanent fix for this problem.
  • Admins can refer to Microsoft Learn for detailed baseline update procedures.
  • From the Intune Customer Success articles



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