Microsoft has identified a known issue with Windows Autopilot device preparation when using Win32 apps alongside a managed installer policy. This can lead to deployment failures as the managed installer policy isn’t applied before app installation. A temporary workaround is available, and a fix is on the way with the upcoming Intune service release.2. *:

Windows Autopilot Device Preparation: A Known Issue
Microsoft has recently acknowledged a known issue affecting Windows Autopilot device preparation, particularly when using Win32 apps and managed installer policies. This situation has raised concerns among IT professionals and organizations relying on Autopilot for streamlined device setups.
What’s New?
The issue arises when a managed installer policy is enabled during the installation of Win32 apps. As a result, deployment issues may occur. The managed installer policy is designed to ensure that only trusted applications can be installed. However, the current setup does not allow for this policy to be delivered before applications are deployed.
“Windows Autopilot device preparation doesn’t currently have the capability to ensure the managed installer policy is delivered prior to delivering applications.”
Major Updates
Microsoft is rolling out a change with Intune’s October service release. This update aims to allow deployments to succeed even if Win32 apps are configured. By skipping all Win32 and Microsoft Store apps during the device preparation policy, users can continue to the desktop without deployment failures.
After this update, the deployment report will indicate that selected Win32 and Microsoft Store apps were “Skipped.” This temporary measure will remain in place until a permanent fix is implemented.
Workaround Solutions
For those facing immediate challenges, the recommended workaround is to remove Win32 apps from all Windows Autopilot device preparation policies. This adjustment ensures that the managed installer policy and dependent apps will install once the user reaches the desktop.
What’s Important to Know?
Organizations should be aware that this issue affects all Win32 apps deployed within the organization. The managed installer policy is configured at the tenant level, making it crucial for IT administrators to understand its implications.
“We’ll continue to update this post as new information becomes available.”
As Microsoft works toward a permanent resolution, staying informed is essential. For further questions or updates, reach out to the Intune support team on X@IntuneSuppTeam. Keeping abreast of these changes will help organizations navigate the complexities of device preparation effectively.
From the Intune Customer Success articles